Package: SNVLFDR 1.0.1
SNVLFDR: Empirical Bayes Single Nucleotide Variant Calling
Identifies single nucleotide variants in next-generation sequencing data by estimating their local false discovery rates. For more details, see Karimnezhad, A. and Perkins, T. J. (2024) <doi:10.1038/s41598-024-51958-z>.
Authors:
SNVLFDR_1.0.1.tar.gz
SNVLFDR_1.0.1.zip(r-4.7)SNVLFDR_1.0.1.zip(r-4.6)SNVLFDR_1.0.1.zip(r-4.5)
SNVLFDR_1.0.1.tgz(r-4.6-any)SNVLFDR_1.0.1.tgz(r-4.5-any)
SNVLFDR_1.0.1.tar.gz(r-4.7-any)SNVLFDR_1.0.1.tar.gz(r-4.6-any)
SNVLFDR_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SNVLFDR/json (API)
| # Install 'SNVLFDR' in R: |
| install.packages('SNVLFDR', repos = c('https://empiricalbayes.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/empiricalbayes/snvlfdr/issues
Last updated from:632d36d5cf. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 99 | ||
| source / vignettes | OK | 109 | ||
| linux-release-x86_64 | OK | 93 | ||
| macos-release-arm64 | OK | 74 | ||
| macos-oldrel-arm64 | OK | 60 | ||
| windows-devel | OK | 72 | ||
| windows-release | OK | 61 | ||
| windows-oldrel | OK | 83 | ||
| wasm-release | OK | 81 |
Exports:get_LFDRsget_LFDRs_given_caller
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimates LFDR values per genomic site | get_LFDRs |
| Estimates LFDR values per mutant site detected by a desired variant caller | get_LFDRs_given_caller |
